Database and Type Names

Database names and Abbreviations

These are the names and abbreviations that are used to refer to specific datasets or sources incorporated into Biozon. that have been integrated into Biozon.

Database Name Abbreviation
BINDbind
GOgo
Genbankgb
Genpeptgb
Interproipr
KEGGkegg
PDBpdb
PIRpir
Refseqref
SWISS-PROTsp
TrEMBLemb
Unigeneug

Searchable Objects

These are object data types in Biozon that represent biological objects or concepts and are searchable via the Biozon complex search interface. Other objects exist in the biozon type hierarchy, but these are the core base types that occupy the leaves of the document hierarchy.

Type Name Internal typeID Description
Domain53Domain part, Domain family, site, etc
Enzyme Family19Enzyme family based upon EC classification
Interaction37Known interactions between objects
Nucleic acid sequence5Nucleic acid sequence
Pathway20Metabolic Pathway
Protein4Sequence of Amino Acids
Structure26Protein structures as PDB coordinates
UniGene cluster48NCBI-defined Unigene cluster

Also see