Source Databases

Biozon is built upon preexisting databases, listed below. Biozon augments these with new computed data (listed in Biozon Data Sets)

DNA Sequence Databases

  • Genbank Last updated June 16 2005 (release 147)
  • RefSeq Last updated September 2005 (release 13)
  • UniGene Last updated April 2004

Protein Sequence Databases

  • SWISSPROT/TrEMBL Last updated April 18 2006 (release 49.5/32.5, UniProt 7.5)
  • RefSeq Last updated September 2005 (release 13)
  • PIR-protein Last updated May 2002
  • Genpept Last updated June 16 2005 (release 147)
  • Proteins extracted from other protein-related databases listed below, such as BIND, PDB
  • EMB, DBJ, PATAA, PRF, REF

Protein Structure Databases

  • PDB Last updated July 19 2005
  • SCOP

Protein-Protein Interactions

  • BIND Last updated June 22 2005 (release of 2005-04-30)
  • DIP Last updated Feb 3 2004 (Full information not publicly accessible)

Pathways

  • KEGG Last updated April 7 2003

Gene Expression

  • BodyMap Last updated March 2003
  • Yeast, Cell-cycle time series (Spellman et al. Mol Bio Cell 9:3273-3297 1998).
  • Yeast, Rosetta (Hughes et al. Cell 102:109-126 2000).
  • Yeast, Stress time series (Gasch et al. Mol Biol Cell 11:4241-4257 2000).
  • Yeast, Stress time series (Shapira et al. Mol Biol Cell 15:5659-5669 2004).

Gene Ontology

Domains

  • InterPro October 13, 2004 (release 8.0)

Also see